MicroInspector is a tool that detects miRNA (microRNA) binding sites in your input sequence by searching against databases of known miRNA binding sites.
miRU is a tool that takes as an input a small miRNA sequence and then searches for complementary matches in TIGR plant-specific gene data sets to predict potential target genes.
Non-translatable RNA transcripts that appear to work at the RNA level.
Database of structure-annotated multiple sequence alignments, covariance models and family annotation for a number of non-coding RNA families.
Highly curated database of aligned and annotated rRNA sequences with accompanying phylogenies; data available for download.
The Structural Classification of RNA (SCOR) is a database designed to provide a comprehensive perspective and understanding of RNA motif structure, function, tertiary interactions and their relationships.
snoGPS allows you to search for H/ACA snoRNA (small nucleolar RNA) genes in a genomic sequence
tRNAscan-SE allows you to search for tRNA genes in genomic sequence. (site hosted by Lowe Lab at UCSC)
tRNAscan-SE allows you to search for tRNA genes in genomic sequence. (site hosted by Eddy Lab at WashU)