Functional RNA

MicroInspector MicroInspector is a tool that detects miRNA (microRNA) binding sites in your input sequence by searching against databases of known miRNA binding sites. miRU miRU is a tool that takes as an input a small miRNA sequence and then searches for complementary matches in TIGR plant-specific gene data sets to predict potential target genes. Non-Coding RNA database Non-translatable RNA transcripts that appear to work at the RNA level. Rfam Database of structure-annotated multiple sequence alignments, covariance models and family annotation for a number of non-coding RNA families. Ribosomal Database Project Highly curated database of aligned and annotated rRNA sequences with accompanying phylogenies; data available for download. SCOR The Structural Classification of RNA (SCOR) is a database designed to provide a comprehensive perspective and understanding of RNA motif structure, function, tertiary interactions and their relationships. snoGPS snoGPS allows you to search for H/ACA snoRNA (small nucleolar RNA) genes in a genomic sequence tRNAscan-SE tRNAscan-SE allows you to search for tRNA genes in genomic sequence. (site hosted by Lowe Lab at UCSC) tRNAscan-SE tRNAscan-SE allows you to search for tRNA genes in genomic sequence. (site hosted by Eddy Lab at WashU)